Identification and control of nonlinear systems by a dissimilation particle swarm optimization-based Elman neural network

In this paper, we first present a learning algorithm for dynamic recurrent Elman neural networks based on a dissimilation particle swarm optimization. The proposed algorithm computes concurrently both the evolution of network structure, weights, initial inputs of the context units, and self-feedback coefficient of the modified Elman network. Thereafter, we introduce and discuss a novel control method based on the proposed algorithm. More specifically, a dynamic identifier is constructed to perform speed identification and a controller is designed to perform speed control for Ultrasonic Motors (USM). Numerical experiments show that the novel identifier and controller based on the proposed algorithm can both achieve higher convergence precision and speed than other state-of-the-art algorithms. In particular, our experiments show that the identifier can approximate the USM's nonlinear input–output mapping accurately. The effectiveness of the controller is verified using different kinds of speeds of constant, step, and sinusoidal types. Besides, a preliminary examination on a randomly perturbation also shows the robust characteristics of the two proposed models.     

Synthesis of poly(methyl acrylate) loops grafted onto silica nanoparticles via reversible addition‐fragmentation chain transfer polymerization

Reversible addition‐fragmentation chain transfer (RAFT) polymerization was used to produce poly(methyl acrylate) (pMA) loops grafted onto silica nanoparticles using doubly anchored bifunctional RAFT agents 1,4‐bis(3′‐trimethoxysilylpropyltrithiocarbonylmethyl)benzene (Z‐group approach) and 1,6‐bis(o,p‐2′‐trimethoxysilylethylbenzyltrithiocarbonyl)hexane (R‐group approach) as mediators. In both cases, molecular weights of the resulting surface‐confined polymer loops increased with monomer conversion, whereas the grafting density was significantly higher in the case of the R‐group supported RAFT polymerization due to mechanistic differences of the RAFT process at the surface. This result was evident from thermogravimetric analysis and supported by scanning electron microscopy. Polymer loops with molecular weights up to 53,000 g mol^?1 were accessible with polydispersities of about 2.0 without and 1.5 with the addition of free RAFT agent. UV signals of the detached pMA loops measured via size exclusion chromatography were shifted to higher molecular weights compared with the corresponding RI signals, indicating branching reactions caused by the close proximity of growing radicals and polymer at the surface of the silica nanoparticles. © 2008 Wiley Periodicals, Inc. J Polym Sci Part A: Polym Chem 46: 7656–7666, 2008     

Investigation of the effect of berberines alkaloids in <Emphasis Type="Italic">Coptis chinensis</Emphasis> Franch on <Emphasis Type="Italic">Bacillus shigae</Emphasis> growthby microcalorimetry

The inhibitory effects of five berberines alkaloids (BAs) from rhizoma of Coptis chinensis Franch, a traditional Chinese medicinal (TCM) herb, on Bacillus shigae (B. shigae) growth were investigated by microcalorimetry. The power-time curves of B. shigae with and without BAs were acquired; meanwhile, the extent and duration of inhibitory effects on the metabolism were evaluated by growth rate constants (k1, k2), half inhibitory ratio (IC50), maximum heat output (Pmax), and peak time (tp). The values of k1 and k2 of B. shigae in the presence of the five BAs decreased with the increasing concentrations of BAs. Moreover, Pmax was reduced, and the value of tp increased with increasing concentrations of the five drugs. The inhibitory activity varied with different drugs. IC50 of the five BAs was respectively 75 μg/mL for berberine, 90 μg/mL for coptisine, 115 μg/mL for palmatine, 220 μg/mL for epiberberine, and 400 μg/mL for jatrorrhizine. The sequence of antimicrobial activity of the five BAs berberine ＞ coptisine ＞ palmatine ＞ epiberberine ＞ jatrorrhizine. The functional groups methylenedioxy at C2 and C3 on phenyl ring improve antimicrobial activity more strongly than methoxyl at C2 and C3 on phenyl ring. However, the effect of bacteriostasis is not significant with methylenedioxy or methoxyl at C9 and C10 on phenyl ring.     

A Traditional Scientific Perspective on the Integrated Information Theory of Consciousness

This paper assesses two different theories for explaining consciousness, a phenomenon that is widely considered amenable to scientific investigation despite its puzzling subjective aspects. I focus on Integrated Information Theory (IIT), which says that consciousness is integrated information (as ϕ^Max) and says even simple systems with interacting parts possess some consciousness. First, I evaluate IIT on its own merits. Second, I compare it to a more traditionally derived theory called Neurobiological Naturalism (NN), which says consciousness is an evolved, emergent feature of complex brains. Comparing these theories is informative because it reveals strengths and weaknesses of each, thereby suggesting better ways to study consciousness in the future. IIT’s strengths are the reasonable axioms at its core; its strong logic and mathematical formalism; its creative “experience-first” approach to studying consciousness; the way it avoids the mind-body (“hard”) problem; its consistency with evolutionary theory; and its many scientifically testable predictions. The potential weakness of IIT is that it contains stretches of logic-based reasoning that were not checked against hard evidence when the theory was being constructed, whereas scientific arguments require such supporting evidence to keep the reasoning on course. This is less of a concern for the other theory, NN, because it incorporated evidence much earlier in its construction process. NN is a less mature theory than IIT, less formalized and quantitative, and less well tested. However, it has identified its own neural correlates of consciousness (NCC) and offers a roadmap through which these NNCs may answer the questions of consciousness using the hypothesize-test-hypothesize-test steps of the scientific method.     

阶梯压电层合梁的波动动力学特性

采用行波理论系统地研究了压电阶梯梁的自由振动分析以及强迫响应的分析方法. 基于分布 参数理论研究了压电阶梯梁的波传播特性，忽略柔性梁横向剪切和转动惯量的影响，给出了 梁的轴向和横向的简谐波解. 将压电阶梯梁离散化为单元，考虑压电片的刚度和质量的影响， 建立了节点散射模型. 应用位移连续和力平衡条件，推导了节点的波反射和波传递矩阵，在 此基础上，引入波循环矩阵的概念，给出波循环矩阵、波传递系数矩阵的确定方法. 应用波 循环矩阵可以有效地计算结构的固有频率. 另外，应用波传递系数研究了压电陶瓷作动器位 置对其驱动能力的影响. 得出两个主要结论：1)作动器靠近悬臂梁固定端将有较强的驱动 能力，悬臂梁边界反射行波产生弯曲消失波有利于增大压电波的模态传递系数；2)模态传 递系数与固有频率的灵敏度密切相关，波传递系数越大, 对应该处固有频率变化灵敏度越大. 另外，数值算例表明了行波方法比有限元方法具有更高的计算精度.     

Kinetics of comet formation in single‐cell gel electrophoresis: Loops and fragments

We investigated the mechanisms of DNA exit during single‐cell gel electrophoresis (the comet assay) by measuring the kinetics of the comet tail formation. In the neutral comet assay, the rate of DNA exit was found to be dependent on the topological state of DNA, which was influenced by either ethidium bromide or a low radiation dose. The results clearly show that the comet tail is formed by extended DNA loops: the loop extension, being reversible when the DNA torsional constraint remains in the loops, is favored when the constraint is relaxed. The kinetics of the comet formation in the case of a high radiation dose points out that accumulation of the single‐strand breaks causes DNA fragmentation. In contrast to the neutral comet assay, the alkaline comet assay is not related to the chromatin loops. Our results imply that the alkaline treatment induces detachment of the loops from the nuclear matrix, and the comet tail is formed by ssDNA fragments, the ends of which are pulled out from the comet head by electric force. We suggest that the kinetic approach can be considered as an important improvement of the comet assay.     

Interorganellar DNA transfer in wheat: dynamics and phylogenetic origin

A homology search of wheat chloroplast (ct) and mitochondrial (mt) genomes identified 54 ctDNA segments that have homology with 66 mtDNA segments. The mtDNA segments were classified according to their origin: orthologs (prokaryotic origin), xenologs (interorganellar DNA transfer origin) and paralogs (intraorganellar DNA amplification origin). The 66 mtDNA sequences with homology to ctDNA segments included 14 paralogs, 18 orthologs and 34 xenologs. Analysis of the xenologs indicated that the DNA transfer occurred unidirectionally from the ct genome to the mt genome. The evolutionary timing of each interorganellar DNA transfer that generated a xenolog was estimated. This analysis showed that 2 xenologs originated early in green plant evolution, 4 in angiosperm evolution, 3 in monocotyledon evolution, 9 during cereal diversification and 8 in the evolution of wheat. Six other xenologs showed recurrent transfer from the ct to mt genomes in more than one taxon. The two remaining xenologs were uninformative on the evolutionary timing of their transfer. The wheat mt nad9 gene was found to be chimeric, consisting of the cereal nad9 gene and its 291 bp 5'-flanking region that included a 58 bp xenolog of the ct-ndhC origin.     

H一射影循环Kaehler流形

本文研究H一射影循环Kaehler流形的性质，导出了该流形曲率张量的代数结构，从而深化了这类流形的已有结果。     

A sensitive, rapid ferricyanide-mediated toxicity bioassay developed using Escherichia coli

A need for rapid toxicity techniques has seen recent research into developing new microbiological assays and characterising their toxicity responses using a range of substances. A microbiological bioassay that determines changes in ferricyanide-mediated respiration for toxicity measurement (FM-TOX) shows particular promise. The development and optimisation of an improved FM-TOX method, incorporating novel features, is described using Escherichia coli as the biocatalyst. Omission of an exogenous carbon source, used in previously described FM-TOX assays, substantially improves the assay sensitivity. In addition, the development of a two-step procedure (toxicant exposure followed by determination of microbial respiratory activity) was found to enhance the inhibition of E. coli by 3,5-dichlorophenol and four other toxicants, compared to single-step procedures. Other assay parameters, such as the ferricyanide concentration, exposure times and optical density of the biocatalyst were also optimised, sometimes based on practical aspects. Toxicity tests were carried out using the adopted technique on both organic and inorganic toxicants, with classic sigmoid-shaped dose-response curves observed, as well as some non-standard responses. IC₅₀ data is presented for a number of common toxicants. The optimised assay provides a good foundation for further toxicity testing using E. coli, as well as the potential for expanding the technique to utilise other bacteria with complementary toxicity responses, thereby allowing use of the assay in a range of applications.